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Dr. Josef Spidlen
Contact
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About
Education
Research Experience
Publications
Publications
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Spidlen Josef, Bray Chris, Brinkman Ryan R.:
FCS 3.1 Implementation Guidance. Cytometry Part A 2012 (in press).
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Spidlen Josef, Shooshtari Parisa, Kollmann Tobias R., Brinkman Ryan R.:
Flow cytometry data standards. BMC Research Notes 2011 Mar 7; 4(1):50.
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Spidlen Josef, Moore Wayne, Parks David, Goldberg Michael, Bray Chris, Bierre Pierre, Gorombey Peter, Hyun Bill, Hubbard Mark, Lange Simon, Lefebvre Ray, Leif Robert,
Novo David, Ostruszka Leo, Treister Adam, Wood James, Murphy Robert F., Roederer Mario, Sudar Damir, Zigon Robert, Brinkman Ryan R.:
Data File Standard for Flow Cytometry, version FCS 3.1. Cytometry Part A 2010; 77(1): pp.97-100.
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Qian Yu, Tchuvatkina Olga, Spidlen Josef, Wilkinson Peter, Gasparetto Maura, Jones Andrew R, Manion Frank J, Scheuermann Richard H, Sekaly Rafick-Pierre, Brinkman Ryan R:
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinformatics 2009; 10:184
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Hahne Florian, Le Meur Nolwenn, Brinkman Ryan R, Ellis Byron, Haaland Perry, Sarkar Deepayan, Spidlen Josef, Strain Errol, Gentleman Robert:
flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinformatics 2009; 10(1):106
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Spidlen Josef, Leif Robert C., Moore Wayne, Roederer Mario, Brinkman Ryan R.:
Gating-ML: XML-based Gating Descriptions in Flow Cytometry. Cytometry A 2008; 73(12): pp.1151-1157.
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Spidlen Josef, Lee Jamie A., Boyce Keith, Cai Jennifer, Crosbie Nicholas, Dalphin Mark, Furlong Jeff,
Gasparetto Maura, Goldberg Michael, Goralczyk Elizabeth M., Hyun Bill, Jansen Kirstin, Kollmann Tobias,
Kong Megan, Leif Robert, McWeeney Shannon, Moloshok Thomas D., Moore Wayne, Nolan Garry, Nolan John,
Nikolich-Zugich Janko, Parrish David, Purcell Barclay, Qian Yu, Selvaraj Biruntha, Smith Clayton,
Tchuvatkina Olga, Wertheimer Anne, Wilkinson Peter, Wilson Christopher, Wood James, Zigon Robert,
the International Society for Advancement of Cytometry Data Standards Task Force, Scheuermann Richard H.,
and Brinkman Ryan R.: MIFlowCyt: The Minimum Information about a Flow Cytometry Experiment. Cytometry A. 2008; 73(10): pp.926-30.
- Spidlen J., Gentleman R., Haaland P., Moloshok T., Ochs M., Smith C., Treister A., and Brinkman R.:
Flow Cytometry Data Standards for the Semantic Web. BC Cancer Agency Annual Cancer Conference,
Vancouver, 2006.
- Spidlen J., Gentleman R., Haaland P., Langille M., Le Meur N., Ochs M., Schmitt C., Smith C., Treister A., and Brinkman R.:
Data Standards for Flow Cytometry. OMICS. 2006 Summer; 10(2), pp.209-214.
- Spidlen J., Gentleman R., Haaland P., Ochs M., Schmitt C., Smith C., Treister A., and Brinkman R.:
Proposed Gating Standard for Flow Cytometry. ISAC 2006 – XIII International Congress, Quebec City, 2006.
- Brinkman R., Spidlen J., Treister A., Smith C., Haaland P., Ochs M., Gentleman R.:
Bioinformatics Data Standards for Flow Cytometry. ISAC 2006 – XIII International Congress, Quebec City, 2006.
- Nagy M., Spidlen J.: Synchronization of Data Models to Support Continuous Health Care.
In: Proceedings of Medical Informatics Europe 2006, Maastricht.
- Spidlen J., Hanzlicek P., Riha A., Zvarova J.: Flexible Information Storage in MUDR-II EHR.
Int J Med Inform. 2006 Mar-Apr; 75 (3-4): pp. 201-208.
- Spidlen J.: Electronic eHealth Record and Telemedicine,
Ph.D. Thesis, UK 1LF, 2005
- Spidlen J., Riha A.: Electronic Health Record and Telemedicine.
In: Proceeding of the X. PhD Conference, Institute of Computer Science, Academy of Sciences of the Czech Republic
(Ed.: Frantisek Hakl), Prague, MATFYZPRESS, ISBN: 80-86732-56-8, 2005, pp. 141-150.
- Spidlen J., Pies M., Teuberova Z., Nagy M., Hanzlicek P., Zvarova J., Dostalova T.:
MUDRLite - An Electronic Health Record Applied to Dentistry by the Usage of a Dental-cross Component.
IFMBE Proceedings, Vol. 11. Prague: IFMBE, 2005. ISSN 1727-1983. pp. 1077-1081.
- Preckova P., Spidlen J., Zvarova J.: Usage of International Nomeclatures and Metathesauruses in Shared Healthcare in the Czech Republic.
Acta Medica Informatica, Vol. 13, No. 4, 2005, pp. 201-205.
- Spidlen J, Pies M., Teuberova Z., Nagy M., Hanzlicek P., Zvarova J., Dostalova T.:
MUDRLite Components Usage for Sharing EHR Data in Dental Medicine.
In: Sharing Health Information, Prague, EuroMISE, ISBN 80-903431-2-0, 2005, pp. 83-87.
- Hanzlicek P., Durovec J., Nagy M., Zvarova J., Spidlen J.: Interoperable Electronic Health Records in Continuous Shared Health Care.
In: Sharing Health Information, Prague, EuroMISE, ISBN 80-903431-2-0, 2005, pp. 29-38.
- Nagy M., Spidlen J.: Data Models’ Flexibility in MUDRLite. In: Sharing Health Information,
Prague, EuroMISE, ISBN 80-903431-2-0, 2005, pp. 56-59.
- Kolesa P., Spidlen J., Zvarova J.: Obstacles to Implementing an Execution Engine for Clinical Guidelines Formalized in GLIF.
Stud Health Technol Inform. 2005; 116 pp. 563-8.
- Preckova P., Zvarova J., Spidlen J.: International nomenclatures in shared heath care in Czech Republic.
In: Sharing Health Information, Prague, EuroMISE, ISBN 80-903431-2-0, 2005, pp. 60-63.
- Spidlen J.: J2ME Usage in Telemedicine Applications Development for Classical Mobile Phones. In: Physician and Technology,
Vol. 35. No.3, CLS J. E. Purkyne, ISSN: 0301-5491, 2004, pp. 55–62.
- Spidlen J.: MUDRLite - Health Record Tailored to your Needs. In: Ph.D. Conference 2004 Proceedings, Paseky nad Jizerou, (Eds: Frantisek Hakl),
Praha, MATFYZPRESS, ISBN: 80-86732-30-4, 2004, pp. 153–163.
- Spidlen J., Nagy M.: PKCS Standards for Medical Documentation Purposes. In: Proceedings of the Information Technologies in Health Care.
(Eds. Jana Zvarova, Petra Preckova), Prague, EuroMISE, ISBN: 80-903431-1-2, 2004, pp. 84-92.
- Hanzlicek P., Spidlen J., Nagy M.: Universal Electronic Health Record MUDR. In: Transformation of Healthcare with Information
Technologies. (Eds: Mariusz Duplaga, Krzysztof Zielinski, David Ingram), Amsterdam, IOS Press, ISBN: 1-58603-438-3,
ISSN: 0926-9630, 2004, pp. 190–201.
- Spidlen J., Hanzlicek P., Zvarova J.: MUDRLite - Health Record Tailored to your Particular Needs. In: Transformation of
Healthcare with Information Technologies. (Eds: Duplaga, Zielinski, Ingram), Amsterdam, IOS Press, ISBN: 1-58603-438-3,
ISSN: 0926-9630, 2004, pp. 202-209
- Spidlen J., Hanzlicek P., Riha A., Zvarova J.: Methods of Flexible Information Storage in MUDR2 Health Record,
In: 11th World Congress on Medical Informatics Proceedings, Medinfo 2004, San Francisco, California, USA, 7.-11.9.2004
- Spidlen J., Hanzlicek P., Nagy M., Zvarova J.: The Interconnection Between Medical Guidelines and Electronic Health Records,
Supplementum Cor et Vasa 2004; 46 (4), Praha Publishing 2004, p. 92
- Nagy M., Hanzlicek P., Spidlen J., Zvarova J.: The Aplication of a Multimedia Health Record in Preventive Cardiology,
Supplementum Cor et Vasa 2004; 46 (4), Praha Publishing 2004, p. 61
- Spidlen J., Hanzlicek P., Riha A., Zvarova J.: Flexible Information Storage in MUDR2 EHR, In
Proceedings of the International Joint Meeting EuroMISE 2004, ISBN 80-903431-0-4, EuroMISE 2004, p. 58
- Spidlen J., Riha A.: Electronic Health Record and Telemedicine, In: Proccedings of the PhD. Conference, Institute of Computer Science,
Academy of Sciences of the Czech Republic, Paseky nad Jizerou 25.-26.9.2003, Matfyzz Press 2003, ISBN 80-86732-16-9, pp. 133-143
- Spidlen J., Adaskova J., Heroutova H., Zvarova J., Mazura I.: Statistical Processing of Genetic Information in the MUDR Record,
International Anthropological Congress, Anthropology and Society 2003, Programme Abstracts, Charles University, Prague,
Faculty of Science, ISBN 80-86561-06-2, p.189
- Spidlen J., Stochl J., Semecky J., Hanzlicek P.: MUDR and Mobile Communication,
Medical Informatics Europe MIE 2003 Proceedings CD, St. Malo
- Hanzlicek P., Spidlen J., Heroutova H.: User interface of MUDR Electronic Health Record,
Medical Informatics Europe MIE2003 Proceedings CD, St. Malo
- Adaskova J., Spidlen J., Stochl J., Zvarova J., Mazura I.: Genetic Information in MUDR Record,
Medical Informatics Europe MIE2003 Proceedings CD, St. Malo
- Spidlen J., Hanzlicek P.: Implementation of the formalized medical guidelines in the electronic health record MUDR,
Znalosti (Knowledge) 2003 Proceedings, VŠB-TU Ostrava, ISBN 80-248-0229-5, pp. 386-391
- Hanzlicek P., Spidlen J., Zvarova J.: The Internet in Connecting Electronic Health Record Mobile Clients,
Technology and Health Care, Vol. 10, Num 6, 2002, ISSN 0928-7329, pp. 502-503
- Zvarova J., Hanzlicek P., Spidlen J.: Electronic Health Record in Cardiology: Pilot Application in the Czech Republic,
Proceedings of Medical Informatics Symposium in Taiwan, 2002, pp. 10-13
- Hanzlicek P., Spidlen J.: Univesal Electronic Health Record, Inteligentní systémy ve zdravotnické péči, p. 9
- Spidlen J.: Database Representation of Medical Information, diplom thesis, UK MFF 2002
CV
Education
Professional Experience
- 2008 - now
Research Associate at Terry Fox Laboratory, BC Cancer Research Centre, Vancouver, BC, Canada
High throughput multi-parametric analysis of flow cytometry data; scientific software development
- 2005 - 2008
Postdoctorate Fellow at Terry Fox Laboratory, BC Cancer Research Centre, Vancouver, BC, Canada
Bioinformatics data standards in flow cytometry (http://flowcyt.sf.net)
- 2001 - 2006
Institute of Computer Science, Academy of Sciences of the Czech Republic, Pod Vodarenskou vezi 2, 182 00 Prague 8, Czech Republic
Research in the field of medical informatics, electronic health record, and telemedicine (http://www.euromise.cz)
- 2000 - 2005
IPPS Ltd., Dobevska 876, 140 00 Prague 4, Czech Republic
Cooperation in design and development of information systems (http://www.ipps.cz)
- 1996 - 2000
Intergram Ltd., Na Porici 27, 110 00 Prague 1, Czech Republic
Cooperation in data processing (http://www.intergram.cz)
- 1998 - 1999
Reuters Ltd., 85 Fleet Street, London EC4P, Great Britain
Development of financial applications (http://www.reuters.com)
Information Technology Experience
- Brainbench Certificates (C Programmer, C++ Programmer, Object-Oriented Developer, Oracle 7 DBA,
TCP/IP Administrator, High IT Aptitude Performer, RDBMS Concepts)
- Database Design, ER Modeling, SQL (MS SQL 7, Oracle 7, 8, 9i, MySQL, Informix)
- Programming
- Java, C, C++, C#, .NET Framework, Eclipse, MS Visual Studio
- Linux, MS Windows, Pocket PC
- XML Development(XML Schema, RDF, OWL)
- Web Design (HTML, Java, PHP)
Membership
- International Society for Advancement of Cytometry (ISAC)
- Member of the Data Standards Task Force
- Flow Informatics and Computational Cytometry Society (FICCS)
- Czech Society of Biomedical Engineering and Medical Informatics (SBMILI)
- Part of Czech Medical Society of Jan Evangelista Purkune (CLS JEP)
- Group member of
- International Federation for Medical and Biological Engineering (IFMBE)
- International Medical Information Association (IMIA)
- European Federation for Medical Informatics (EFMI)
Languages
Certificates and Licenses
- Driving Licence (Czech and British Columbia, Canada)
- International IANTD Scuba Diving Licence: Advanced Open Water and Nitrox Diver
- Water Life Saving Service: Senior Lifeguard (Czech Red Cross)
- Pleasure Craft Operator (European Boat Operating License)
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